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| Ex Vivo Metrics™: How Drug Studies in Reanimated Human Organs Could Revitalize the Drug Development Process
An editorial by Gerald Curtis, PhD
Fallout from the catastrophic phase I clinical trial of TeGenero’s monoclonal antibody TGN1412 in March 2006,1 in which 6 volunteers suffered life-threatening “cytokine storms,” includes newly tightened regulations in the United Kingdom and renewed concern worldwide about first-in-human trials, particularly for compounds with novel targets or mechanisms of action.
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Editorials
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| DNA
Genotyping from human FFPE Samples |
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In this feasibility study, Applied Biosystems demonstrates how the combined
use Recover All Total Nucleic |

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Acid Isolation Kit and TaqMan SNP Genotyping
Assay can result in high quality, reproducible, and reliable genotyping
data.. Read
more |
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Millipore has
launched the CellCiphr Cytotoxicity Profiling Assay Kit
using human HepG2 cells. This assay panel detects
drug-induced hepatotoxicity and is expected to be used
early in the drug discovery process. read
more
Cartesian Gridspeed, Ltd. announced the
opening of its new sales, marketing and technical support
subsidiary, SLIM Search, Inc. in Mission Viejo,
California. SLIM
Search, Inc. is marketing
its SLIM Search genomic search tool to universities,
government research, and research and development
departments of biotechnology corporations and individual
contributors. read
more
The new Variant Reporter Software from Applied
Biosystems automates detection of variants and
streamlines data analysis process. The software uses
proprietary algorithms to identify genetic variations
based on standardized or user-defined parameters. Results
are presented for validation in a visual format that
allows researchers to simultaneously compare multiple
quality control metrics. More information and a free trial
version are available at:
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Products
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| We invite your comments and feedback for this edition of Biomarker Breakthroughs. Email us at
maloryea@gmail.com |
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Oxonica’s Bid to Reshape POC Diagnostics:
Michael J. Natan Describes Evolutionary and Revolutionary
Technologies
By Malorye Allison
Michael Natan has spent years souping up an
established technology he says could now revolutionize the
point-of-care (POC) testing world. "POC is laden with
100-year old technologies," Natan explains.
"There’s nothing really new that’s even close to
market."
Oxonica’s twist on SERS (surface enhanced Raman
scattering) is both those things, he maintains. Natan is
president and chief technical officer at Oxonica, which
aims to commercialize new tests based on a well-documented
physical effect – the change in frequency that occurs in
photons when they are bounced off different types of
particles. Those particle-specific frequencies are unique
enough to serve as molecular "fingerprints."
Unfortunately, such particles are typically
promiscuous and bind many molecules at once. "SERS
using uncoated nanoparticles is extremely sensitive and
not specific," Natan says. As a result, early efforts
to use SERS as a signal detector bombed.
Natan was fascinated with the technology, however, and
as a professor at Penn State, he came up with a neat way
around this problem: He coats the particles with different
reporter molecules and then encapsulates them with a glass
shield. Analyte-binding molecules, such as antibodies, are
then attached to the glass. The different particles still
emit their own signature frequencies, but now the
particles bind only to their targets.
Today, Oxonica is developing a range of Nanoplex
products using its proprietary 50-nm silica-coated gold
nanoparticles. It’s a completely new type of signaling
based upon a very well-documented effect, and Natan
believes it has the power to transform many key diagnostic
assays. "If major diagnostics players pick up this
technology, it would become ubiquitous," he says.
Oxonica’s researchers are working on two major
applications. First, they are using their nanoparticles to
try and dramatically improve lateral flow immunoassays (LFIs)
– those handy and widespread little sticks that can
detect pregnancy, ovulation, and scores of other
biological states. Natan’s group is also aiming even
higher though. He says they could "redefine" how
POC testing is done with a no-wash assay that requires
just one step, but delivers a strong enough signal it can
even be carried out in substances like blood or urine.
The lateral flow immunoassay tactic could have a big
payoff by itself. Natan points out that LFI goes
off-patent in the next few years, which means that profits
will start shrinking. Meanwhile, the main drawback to LFI
is its lack of sensitivity.
With their approach, Natan says Oxonica can improve
LFI’s sensitivity by at least 10 fold and possibly by as
much as 100 fold. The glass coating insulates the
particles from the assay’s basic surface chemistry. As a
result, a Nanoplex-based LFI device can use brighter
particles, providing a much clearer signal. In addition,
multiple particles can be used, so LFI could finally be
multiplexed.
"People are already very comfortable with lateral
flow immunoassays," says Natan. "If you offer
improvements without requiring any other changes, why
wouldn’t they adopt it?"
Natan calls Oxonica’s LFI approach "game
changing" but adds that it is only an
"evolutionary" development. "Our no-wash
assay, meanwhile, is truly revolutionary," he says.
"It’s a disruptive technology, and so it’s going
to be a bigger challenge to get it adopted."
The no-wash assay uses the Nanoplex biotags along with
magnetic beads that carry antibodies. The biotags complex
with the beads, which are then pulled down to the bottom
of a tube over a period of 30 minutes. The test uses
near-infrared detection and can be carried out in complex
samples and multiplexed.
Getting a disruptive technology onto the market
requires money and muscle. Oxonica will thus lean on
investors and key partners. "Every collaboration
takes time to manage, so we have to be careful about how
thin we spread ourselves," Natan says. He adds that
currently, "Our major limiting resource is time for
new assay development." The more assays available
using the technology, the more likely it is for the tool
to get widespread adoption.
The company’s next milestones are to demonstrate
cGMP manufacturing of the material and to get some
products out – either on their own or through partners,
such as Becton Dickinson, which already has a
non-exclusive license to certain diagnostic applications.
"At the end of the day we will be judged on the
quality of our particles," Natan says.
While the challenges facing a new technology platform
are myriad, Natan says he is pleased by the market’s
reaction to his tools and the lack of relevant
competitors. "But what’s been most encouraging is
the FDA’s responsiveness to new assay platforms, and in
particular those involving multiplexing" he says. The
drive toward multiplexing will not just enable testing of
multiple analytes, it will also help some single-analyte
assays be improved by use of internal calibration. Oxonica’s
first product may do multiple tests for the same analyte,
as well as incorporate standards, to improve precision.
While POC will be their first target, overall, Natan
sees a huge range of opportunities ahead, including
histopathology, in vivo and point-of-use testing
for things like avian flu and E. coli. He says his
platform is like PCR, "but broader," and that
life scientists are starting to agree with him.
"Increasingly, I hear people saying ‘that will work
for my assay’," Natan says. "That tells me we
are barking up the right tree."

Oxonica's proprietary Nanoplex particles.
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